March 15, 2017

CLUE.IO has replaced

Question: Where can I download LINCS L1000 datasets?
For LINCS Phase I data see GEO GSE92742
For LINCS Phase II data see GEO GSE70138
For CMAP-HBS-LINCS contest data, see GEO GSE92743

Question: I'd rather not download all the data - do you have analysis tools?
Analysis tools from the Connectivity Map project are now available on the Broad Institute's CLUE software platform. Sign up at

Question: Is there an API? A new API is now available. See

Please contact with any questions.